SNP Profiles of LP 432 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AA	CG	CC	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
1._LP_4_/32_[POU]	CT	AA	CG	CC	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
2._LP_4_/32_[POU]	CT	AA	CG	CC	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
3._LP_4_/32_[POU]	CT	AA	CG	CC	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
4._LP_4_/32_[POU]	CT	AA	CG	CC	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
5._GC-07-069-4-05	CT	AA	CG	CC	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
6._GC-07-081-5-03	CT	AA	CG	CC	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
7._GC-07-081-5-03	CT	AA	CG	CC	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
8._GC-07-081-5-03	CT	AA	CG	CC	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
9._GC-07-081-5-03	CT	AA	CG	CC	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
10._RUQ_883	_	AA	CG	CC	_	_	_	TT	_	_	_	_	TT	AG
11._LP_4_/32_[POU]	CT	AA	GG	CC	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
12._RUQ_883	CT	AG	CG	CC	CT	AA	CC	TT	CT	CT	AA	AA	TT	AG
13._LP_4_/32_[POU]	CT	AA	CG	CC	CT	AC	CT	GT	CT	CT	AA	AG	CT	AG
14._GC-07-069-4-05	CT	AA	CG	CC	CT	AC	CT	GT	CT	CT	AA	AG	CT	AG
15._RUQ_883	AG	AA	CC	GG	AA	AA	GG	AA	_	_	AA	AA	AA	AG
16._RUQ_883	_	_	CC	_	_	_	_	GT	_	CC	_	AG	_	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	TT	CC	CG	GT	GG	CT	CC	CC	GT	CC	AG
1._LP_4_/32_[POU]	TT	AA	GG	TT	CC	CG	GT	GG	CT	CC	CC	GT	CC	AG
2._LP_4_/32_[POU]	TT	AA	GG	TT	CC	CG	GT	GG	CT	CC	CC	GT	CC	AG
3._LP_4_/32_[POU]	TT	AA	GG	TT	CC	CG	GT	GG	CT	CC	CC	GT	CC	AG
4._LP_4_/32_[POU]	TT	AA	GG	TT	CC	CG	GT	GG	CT	CC	CC	GT	CC	AG
5._GC-07-069-4-05	TT	AA	GG	TT	CC	CG	GT	GG	CT	CC	CC	GT	CC	AG
6._GC-07-081-5-03	TT	AA	GG	TT	CC	CG	GT	GG	CT	CC	CC	GT	CC	AG
7._GC-07-081-5-03	TT	AA	GG	TT	CC	CG	GT	GG	CT	CC	CC	GT	CC	AG
8._GC-07-081-5-03	TT	AA	GG	TT	CC	CG	GT	GG	CT	CC	CC	GT	CC	AG
9._GC-07-081-5-03	TT	AA	GG	TT	CC	CG	GT	GG	CT	CC	CC	GT	CC	AG
10._RUQ_883	_	_	_	_	CC	CG	GT	_	CT	CC	CC	GT	CC	AG
11._LP_4_/32_[POU]	TT	AA	GG	TT	CC	CG	GT	AG	CT	CC	CC	GT	CC	AG
12._RUQ_883	TT	AA	GG	TT	CC	CG	GT	AG	CT	CC	CC	GT	CC	AG
13._LP_4_/32_[POU]	TT	AA	CG	CT	CT	CG	GG	AG	CT	AC	CC	GT	AC	AA
14._GC-07-069-4-05	TT	AA	CG	CT	CT	CG	GG	AG	CT	AC	CC	GT	AC	AA
15._RUQ_883	AA	AA	GG	AA	GG	CG	AC	_	AG	CC	CC	AC	CC	_
16._RUQ_883	_	_	_	_	_	GG	GT	AA	_	CC	CG	_	AA	_

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	TT	CT	GG	CG	AC	CC	GG	AC	AT	GG	X_X	X_X	X_X
1._LP_4_/32_[POU]	GG	TT	CT	GG	CG	AC	CC	GG	AC	AT	GG	X_X	X_X	X_X
2._LP_4_/32_[POU]	GG	TT	CT	GG	CG	AC	CC	GG	AC	AT	GG	X_X	X_X	X_X
3._LP_4_/32_[POU]	GG	TT	CT	GG	CG	AC	CC	GG	AC	AT	GG	X_X	X_X	X_X
4._LP_4_/32_[POU]	GG	TT	CT	GG	CG	AC	CC	GG	AC	AT	GG	X_X	X_X	X_X
5._GC-07-069-4-05	GG	TT	CT	GG	CG	AC	CC	GG	AC	AT	GG	X_X	X_X	X_X
6._GC-07-081-5-03	GG	TT	CT	GG	CG	AC	CC	GG	AC	AT	GG	X_X	X_X	X_X
7._GC-07-081-5-03	GG	TT	CT	GG	CG	AC	CC	GG	AC	AT	GG	X_X	X_X	X_X
8._GC-07-081-5-03	GG	TT	CT	GG	CG	AC	CC	GG	AC	AT	GG	X_X	X_X	X_X
9._GC-07-081-5-03	GG	TT	CT	GG	CG	AC	CC	GG	AC	AT	GG	X_X	X_X	X_X
10._RUQ_883	_	TT	CT	GG	CG	AC	CC	GG	AC	_	_	X_X	X_X	X_X
11._LP_4_/32_[POU]	GG	TT	CT	GG	_	AC	CC	GG	AC	AT	GG	X_X	X_X	X_X
12._RUQ_883	GG	TT	CT	GG	CG	AC	CC	GG	AC	AT	GG	X_X	X_X	X_X
13._LP_4_/32_[POU]	AG	AA	CC	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X
14._GC-07-069-4-05	AG	AA	CC	AG	CC	AC	CT	TT	CC	TT	CG	X_X	X_X	X_X
15._RUQ_883	GG	TT	AG	GG	CG	AC	GG	CC	AC	AT	GG	X_X	X_X	X_X
16._RUQ_883	_	_	_	AA	_	_	_	_	CC	_	_	X_X	X_X	X_X

Input profile: LP_4_/32_[POU]

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Mars Center for Cocoa Science, Brazil

Location: 7503 2

Dapeng Zhang, 2016

1._LP_4_/32_[POU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7503 3 > FP

Dapeng Zhang, 2016

2._LP_4_/32_[POU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7503 4

Dapeng Zhang, 2016

3._LP_4_/32_[POU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7503 1

Dapeng Zhang, 2016

4._LP_4_/32_[POU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7405 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

5._LP_4_/32_[POU] GC-07-069-4-05

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

6._LP_4_/32_[POU] GC-07-081-5-03

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

7._LP_4_/32_[POU] GC-07-081-5-03

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

8._LP_4_/32_[POU] GC-07-081-5-03

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

9._LP_4_/32_[POU] GC-07-081-5-03

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

10._LP_4_/32_[POU] RUQ_883

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

11._LP_4_/32_[POU]

97.4 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C752

Dapeng Zhang, 2016

12._LP_4_/32_[POU] RUQ_883

94.9 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

13._LP_4_/32_[POU]

65.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7405 3 > FP

Dapeng Zhang, 2016

14._LP_4_/32_[POU] GC-07-069-4-05

65.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

15._LP_4_/32_[POU] RUQ_883

55.7 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

16._LP_4_/32_[POU] RUQ_883

42.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25